“We must remember that we too were once persecuted and victimized,” they wrote.
“We too were once aliens and we should happily embrace refugees who have fled their homeland in order to save their and their families’ lives.”
One of the letters called on Shlomo Mor-Yosef, the director general of the Population and Immigration Authority, to halt the expulsions altogether.
Tens of thousands of African migrants arrived in Israel until 2012, when a new border fence with Egypt cut off smuggling routes from Sinai.
Mr Netanyahu has made their deportation a priority in recent months, with the policy popular with his voter base.
He made two visits last year to the south Tel Aviv neighbourhoods where most of the migrants live, in a show of solidarity with working-class residents who complained about conditions since the migrants arrived.
A controversial plan to offer $3,500 (£2,454) in cash to each of the estimated 35,000 African migrants in return for voluntarily leaving the country was approved by the cabinet last month.
Those who take the deal would be sent to Rwanda, irrespective of whether it is their home country, while anyone who refuses will face an indefinite jail term.
Rwanda will reportedly receive $5,000 (£3,500) for each migrant it accepts, although the country subsequently said it would never accept migrants deported against their will.